Doxygen: rename all .dox files to end with .md

Using a standard ending here will let other tools that expect
markdown understand our output here.

This commit was automatically generated with:

   for fn in $(find src -name '*.dox'); do \
      git mv "$fn" "${fn%.dox}.md"; \
   done

src/lib/encoding/lib_encoding.md

@@ -0,0 +1,6 @@
+@dir /lib/encoding
+@brief lib/encoding: Encoding data in various forms, types, and transformations
+
+Here we have time formats (timefmt.c), quoted strings (qstring.c), C strings
+(string.c) base-16/32/64 (binascii.c), and more.
+